﻿<?xml version="1.0"?>

<BioPatML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:noNamespaceSchemaLocation="BioPatML.xsd">
	<Definition name="promoter">
		<Definitions>
			<Definition name="sigma70" >
				<!-- sub-definitions -->
				<Definitions>
					<Definition name="-10element" >
						<Motif motif="TATAAT" alphabet="DNA" threshold="0.7" />
					</Definition>
					<Definition name="-35element" >
						<Motif motif="TTGACA" alphabet="DNA" threshold="0.7" />
					</Definition>
				</Definitions>
			</Definition>
		</Definitions>
		<Series  name = "series" impact = "0.9" threshold = "0.7" mode = "BEST">
			<Use name="useTag" definition="sigma70.-35element"/>
			<Gap name = "gap" minimum = "1" maximum = "3" increment="1.0" impact = "0.0"  />
			<Use definition ="sigma70.-10element"/>
		</Series>
	</Definition>
</BioPatML>